Is it clunking especially when putting a little torque to the ground? A bent transmission cross-member can add a couple of degrees of skew in your tranny can cause a thump/groaning sound. Feels like someone tapping on your floorboard... but you can't really pinpoint where.
Mine started doing this after I bottomed out semi-hard one night.
Torsion bar mounts could also be the cause. When your truck is parked, lay down beside it, and push up on the torsion cross member as hard as you can. If it seems like it's flexing a little bit, the rubber could be torn. Try both sides. If it clunks more when you're turning right, the left torsion bar mount could be broken/torn, and vice-versa for the right.